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Taxes for California physicians with 1099 income

LLC rules, S corp math and locum tenens taxes, answered with 2026 figures and the source behind each one. Then a published-fee path if you want our team to set it up.

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The short answers

  • A California physician cannot practice medicine through an LLC, including one formed in another state. The options are a sole proprietorship or a professional medical corporation.
  • "S corp" is a federal tax election, not an entity. A medical corporation can make it.
  • If your W-2 job already pays more than $184,500 (the 2026 Social Security wage base), an S corp salary can cost more payroll tax than staying a sole proprietor. If your income is mostly 1099, it usually costs less.
  • Medicine keeps the full 20% QBI deduction when 2026 taxable income is under $403,500 joint or $201,750 single. Above $553,500 joint or $276,750 single, it is gone.
  • California's pass-through entity elective tax runs through 2030 and is often the deciding factor for high-earning medical corporations.

Start here

A written entity review, from $399

Sole proprietor or medical corporation, modeled on your numbers. If the answer is "not yet," you stop there with the answer in writing.

What happens next

  1. Request availability with a short form.
  2. We confirm fit, scope and timing in writing. No fee until then.
  3. You upload documents to the secure portal and receive a written recommendation.

What to have ready

  • Your contract or offer letter
  • Latest pay stub or W-2
  • Last year's tax return
  • Start date and the states you will work in
§ 01Entity rules

Can a doctor form an LLC in California?

Not to practice medicine. California Corporations Code section 17701.04(e) says nothing in the LLC Act permits a domestic or foreign LLC to render professional services in California, as defined in section 13401. Medicine is a licensed professional service, and California has no PLLC.

Physicians practice through a professional medical corporation instead (Business and Professions Code section 2406). Corporations Code section 13401.5 allows certain other licensed health professionals to hold a minority stake, with physicians owning a majority.

Why do so many physicians say they have an LLC? Most practice in a state that allows physician PLLCs, use the LLC for real estate or investments, or are describing a medical corporation. A filing the Secretary of State accepted is not proof the structure is allowed.

Sole proprietor

No entity. Schedule C and self-employment tax. Often right for small, new or uncertain 1099 income.

Medical corporation taxed as an S corp

Salary through payroll, remaining profit as distributions. California taxes S corps at 1.5% of net income, with an $800 minimum waived for the first taxable year.

Medical corporation taxed as a C corp

Rarely the right fit for a solo physician.

Your attorney forms the medical corporation. Our team handles the tax election, payroll and filings, and works alongside your counsel.

§ 02Payroll tax

Should a physician elect S corp status?

It depends mostly on your W-2 income. Social Security tax stops at the wage base, $184,500 in 2026. A sole proprietor's Social Security tax is reduced by W-2 wages already taxed. An S corp is a separate employer, so its salary triggers a new 6.2% employer Social Security tax that is never refunded. Only the employee share comes back as an excess Social Security credit.

Illustration: federal payroll and self-employment tax on $100,000 of 1099 profit, 2026, married filing jointly, spouse with no wages

Attending with a $300,000 W-2 job

Sole proprietor$3,509
S corp, $60,000 salary$6,000

The S corp costs about $2,491 more before its other costs.

Physician with only 1099 income

Sole proprietor$14,130
S corp, $60,000 salary$9,180

The S corp saves about $4,950 before its other costs.

Sole proprietor figures apply self-employment tax to $92,350 of net earnings. S corp figures apply employer and employee Social Security and Medicare, plus Additional Medicare where it applies, to the $60,000 salary; in the first case the employee Social Security share is assumed refunded. Not included: income tax effects, QBI, California's 1.5% S corp tax, California SDI (no wage cap), unemployment taxes, payroll and filing fees, and the PTE elective tax. Illustrative only; a defensible physician salary is often higher than $60,000.

Those excluded items can move the answer either way, which is why we model them together before recommending a structure, and why our answer is sometimes "not yet."

§ 03Reference

2026 tax numbers physicians need

Primary sources for these figures are listed at the end of this page.

Item2026 figureSource
Social Security wage base$184,500SSA
Additional Medicare Tax0.9% above $250,000 joint, $200,000 singleIRS
QBI threshold for medicine$403,500 joint, $201,750 single; phased out at $553,500 / $276,750Rev. Proc. 2025-32
SALT deduction cap$40,400, reduced by 30% of MAGI over $505,000, floor $10,000IRC 164(b), as amended in 2025
401(k) and 403(b) employee deferral$24,500, shared across 401(k) and 403(b) plans; a governmental 457(b) has its own separate limitIRS Notice 2025-67
Catch-up deferral$8,000 at age 50+; $11,250 at ages 60 to 63; must be Roth if 2025 FICA wages from that employer exceeded $150,000IRS Notice 2025-67
Total annual additions limit$72,000 per unrelated employer; a 403(b) is combined with a solo 401(k) of a business you controlIRS Notice 2025-67; Treas. Reg. 1.415(f)-1
California S corp tax1.5% of net income, $800 minimum (waived first year)FTB
California PTE elective tax9.3%; June 15 payment of the greater of 50% of prior-year PTE tax or $1,000FTB, SB 132
S corp election deadline2 months and 15 days after the start of the tax yearIRS Form 2553 instructions

Does the QBI deduction apply to doctors?

Yes, below the threshold. Health is a specified service business. In 2026 the full 20% deduction applies under $403,500 of joint taxable income ($201,750 single) and phases out completely at $553,500 ($276,750).

Every dollar of S corp salary leaves QBI. Under the threshold, the lost deduction can offset much of the payroll tax the S corp saves.

Is California's PTE elective tax worth it for a physician?

Often, at higher incomes. An S corp pays 9.3% at the entity level, the federal return deducts it outside the SALT cap, and you take a California credit. It is extended through 2030.

Sole proprietors cannot elect it. For 2026 and later, missing the June 15 payment no longer voids the election, but it cuts your credit by 12.5% of your share of the shortfall.

How much can I put into retirement with 1099 income?

Two limits work differently. The $24,500 employee deferral is shared between your hospital 401(k) or 403(b) and a solo 401(k). A governmental 457(b) has its own separate limit.

The $72,000 total limit is the trap. If your hospital plan is a 401(k), a solo 401(k) at your own unrelated practice generally gets its own $72,000. If it is a 403(b), the 403(b) and your solo 401(k) share one $72,000 limit, because a 403(b) is combined with plans of a business you control.

§ 04Locum tenens

How do locum tenens physicians handle taxes?

Travel depends on your tax home

Your tax home is the general area of your main place of work. Travel to a temporary 1099 assignment is deductible; one expected to last more than a year is not. If you have no regular main place of work, the IRS may treat you as itinerant, and travel is not deductible at all. Business meals are generally 50% deductible.

Each work state may tax you

Income is generally taxed where the work is performed, so shifts in other states can mean nonresident returns there. California residents then claim a credit for tax paid to the other state where allowed.

No withholding means estimates

Federal estimates are due in four equal parts. California's are 30%, 40%, 0% and 30%. Above $150,000 of prior-year AGI, the federal safe harbor is 110% of last year's tax; California requires current-year estimates once AGI reaches $1 million.

Who we work with

Final-year residents and fellows

Structure belongs before the first 1099 payment. A July start means planning in spring.

Attendings adding locums

W-2 plus contract shifts, often across states, with estimates kept current.

Physicians relocating to California

A PLLC that works in Texas or Florida does not work here. We map what changes and when.

International medical graduates

Dual-status years, FBAR and treaty positions, in English, Turkish or Spanish. Visa work authorization is a question for immigration counsel.

What it costs

The physician first-year path

Starting fees, published. Your final fixed fee is confirmed in writing before any work begins.

A typical first year as a medical corporation starts at $5,093: the review, the setup bundle and the full S corp year.

Step 1 · Decide

Entity and S election review

A written recommendation using your contract, W-2 income and household picture.

Entity / S-Election Review
$399
Complex case: Specialist Discovery Session, credited toward your engagement
$497

Step 2 · Set up

New Business Starter Bundle

After your attorney forms the corporation: EIN, S corp election and the first year of registered agent service, as one engagement.

Bundle
$699
Optional: quarterly estimated-tax service
$349

Step 3 · Run the year

S-Corp Owner Complete

1120-S with the California return and reasonable-compensation memo, your joint 1040, four quarters of payroll and a planning session.

Annual $4,524 value
$3,995/yr
Or 12 monthly payments
$369/mo
Each additional state return
+$125

Moonlighting income still small or uncertain? Staying a sole proprietor is often right: Schedule C returns start at $850, with QBI analysis included. S corp owners can add an accountable plan from $499. Full price list

How our team works

Two reviews on every return

Prepared, second-reviewed, then reviewed with you before filing.

IRS representation in house

Enrolled Agents hold unlimited practice rights before the IRS, so our team can represent you in audits, appeals and collections wherever you live.

Secure by design

Work runs through an encrypted client portal under a written information security plan aligned with the FTC Safeguards Rule.

Fixed fees in writing

Scope and price agreed before work starts. No percentage or contingent fees.

More questions physicians ask

When is the S corp election due?

Form 2553 is due no more than 2 months and 15 days after the start of the tax year it should apply to. A new corporation's first tax year starts on the earliest of when it has shareholders, acquires assets or begins doing business. Late-election relief exists, but planning ahead is cheaper.

What does physician tax setup cost?

The entity review starts at $399, the setup bundle at $699 and S-Corp Owner Complete at $3,995 per year or $369 per month, so a typical first year as a medical corporation starts at $5,093. Sole proprietor Schedule C returns start at $850. Your final fixed fee is confirmed in writing before work begins.

Can I keep an LLC for my rental property or investments?

Yes. The restriction covers rendering professional services. An LLC can hold real estate or investments, subject to California's annual LLC tax and fee.

Can I deduct travel for locum work as a W-2 employee?

Not on your federal return. California still allows unreimbursed employee business expenses as an itemized deduction on your state return. Travel tied to 1099 work is a business expense if the assignment is temporary and you have a tax home.

Do you form the medical corporation?

No. Formation is legal work for a California attorney. Our team handles the tax side and coordinates with your counsel.

Do I need to live in Los Angeles?

No. Engagements run through our secure portal, and IRS representation is federal, so it applies wherever you live. Our physician practice focuses on California structure.

Are you a CPA firm?

No. Arc & Ledger is an Enrolled Agent-led firm. Tax preparation, planning and IRS representation do not require a California CPA license.

Sources

  1. California Corporations Code 17701.04 and 13401.5
  2. Business and Professions Code 2406
  3. SSA 2026 COLA fact sheet
  4. IRS, Additional Medicare Tax questions and answers
  5. IRS Rev. Proc. 2025-32
  6. IRS Notice 2025-67, 2026 retirement plan limits
  7. Treas. Reg. 1.415(f)-1, aggregation of plans
  8. IRS Instructions for Form 2553
  9. IRS Publication 463 and Topic 511, Business travel expenses
  10. FTB, S corporations
  11. FTB Tax News, May 2026: PTE elective tax and FTB analysis of SB 132
  12. FTB, Estimated tax payments

Signing a contract this season?

Request availability and tell us your start date. We confirm fit and timing in writing before any fee is charged.

Disclaimer: this page is general information, not tax or legal advice, and does not create a practitioner-client relationship. Entity formation and immigration questions belong with licensed attorneys. Figures reflect law as of October 13, 2026.